Summary and Setup

This lesson introduces quality control for next generaetion sequencing data, using command lines tools.

It has been adapted from the following materials:

• Galaxy Training Network - Quality Control
• A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
• Software Carpentry Shell Novice

Quick Start

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This lesson is avialable from the (beta) try.fastqe.com portal:

http://115.146.95.20:8080/

with all software and data available.

To download the sample data locally, use the following links:

• Female snake, mouth sample
• Female snake, musk sample

This data is taken from a microbiome sequencing project investigating sexually dimorphic metagenomes associated with garter snake tissue.