Summary and Schedule
This lesson introduces quality control for next generaetion sequencing data, using command lines tools.
It has been adapted from the following materials:
- Galaxy Training Network - Quality Control
- A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
- Software Carpentry Shell Novice
| Setup Instructions | Download files required for the lesson | |
| Duration: 00h 00m | 1. Command line tools for quality control | How to perform quality control of NGS raw data? |
| Duration: 00h 07m | 2. The FASTQ format and FASTQE | |
| Duration: 00h 12m | 3. Filtering with fastp | |
| Duration: 00h 24m | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.
Quick Start
This lesson is avialable from the (beta) try.fastqe.com portal:
with all software and data available.
To download the sample data locally, use the following links:
This data is taken from a microbiome sequencing project investigating sexually dimorphic metagenomes associated with garter snake tissue.